PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_121578g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family AP2
Protein Properties Length: 635aa    MW: 70501.4 Da    PI: 6.2873
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_121578g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.16.1e-15255314155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aak ++ a++k++g
  MA_121578g0010 255 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDKEEKAAKSYDLAALKYWG 314
                     78*******************988886678446*************************98 PP

2AP246.31.1e-14359408355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  MA_121578g0010 359 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 408
                     9***************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-15255324IPR016177DNA-binding domain
PfamPF008474.1E-11255314IPR001471AP2/ERF domain
CDDcd000181.76E-20255322No hitNo description
SMARTSM003801.9E-28256328IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-14256323IPR001471AP2/ERF domain
PROSITE profilePS5103218.742256322IPR001471AP2/ERF domain
PRINTSPR003671.6E-6257268IPR001471AP2/ERF domain
CDDcd000185.75E-25357418No hitNo description
SuperFamilySSF541718.5E-18357418IPR016177DNA-binding domain
PROSITE profilePS5103219.23358416IPR001471AP2/ERF domain
SMARTSM003802.9E-34358422IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-18358416IPR001471AP2/ERF domain
PfamPF008472.1E-9359408IPR001471AP2/ERF domain
PRINTSPR003671.6E-6398418IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MNNWLAFSLS PHLAIDVSAS ADQSAQPQQL SSVPSSFNCL QASQMPRSTL TYQSYGVNSE  60
NGGNSFYAPM PLKSDGSFCI MEAIGRSQIE DWHDLKPPVL QAGRVQSPNV MGSRLSSSDS  120
QYEMAPNGTS DNGSPKLEDF LGGASLGSHE YSTSARDHQS MSLSLQESMY FDHNNSTNES  180
HESLNNIGDL QSQALTLTMS PGSQSSSVTI VPHSGTNAEC VAVETSRKRA AGSKSGITRQ  240
PVPRKSIDTF GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK EGQTRKGRQV YLGGYDKEEK  300
AAKSYDLAAL KYWGPSTHIN FPLNTYEKEL EEMKHMTRQE YVANLRRKSS GFSRGASMYR  360
GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGTN AVTNFDISRY  420
DVKRILASNT LLVGESARLN RDQLAEPLTA EPDQADVPIV IHQIANEKYN AKETDYEDED  480
TKNNWQMQVQ DQDQNQINSC SNEPSDHDKI WDDQKPSQSF TESQHLAALH NLMGLDHAST  540
TERNGESSNN NNNNPLLRDI SASPRSPGAS IGREEHEEEA AMSPNAQNEN GLFFSSKQPA  600
LQINNALSSW MTQAARPAIN SMAHHIPMFA SWNDT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1005550.0BT100555.1 Picea glauca clone GQ0025_E20 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ389141e-137ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLB9T5Q91e-161B9T5Q9_RICCO; Putative uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-133AP2 family protein